Plot allele ratios from raw segmented data — allele_ratio_plot • Battenberg

Plot allele ratios from raw segmented data

allele_ratio_plot(
  samplename,
  bafsegmented,
  logrsegmented,
  outputfile,
  logr,
  max.plot.cn = 5
)

Arguments

samplename: Name of the sample for the plot title
bafsegmented: The BAFsegmented data read in as a data.frame
logrsegmented: The logRsegmented data read in as a data.frame
outputfile: Full path of file where the figure is to be stored
logr: A data.frame with the logr, either logr or allelecounts must be supplied
max.plot.cn: Maximum y-axis value to plot (Default: 5)

Author

sd11