Calculate psi based on a reference segment and its associated logr
calc_psi_t(total_cn, r, rho, gamma_param)
Arguments
- total_cn
Integer representing the total clonal copynumber (i.e. nMajor+nMinor)
- r
The LogR of the segment with the total_cn copy number
- rho
A cellularity estimate
- gamma_param
Platform gamma parameter