Generates haplotype blocks, MSAI results, and plots from phasing information contained in multisample Battenberg runs

Source: R/haplotype_external.R

Generates haplotype blocks, MSAI results, and plots from phasing information contained in multisample Battenberg runs

call_multisample_MSAI(
  rdsprefix,
  subclonesfiles,
  chrom_names,
  tumournames,
  plotting = T
)

Arguments

rdsprefix

Prefix of the RDS files containing the multisample haplotypes and BAF

subclonesfiles

Vectors containing the paths to the different subclones.txt files

chrom_names

Names of the chromosomes

tumournames

Vector of sample names

plotting

Should the multisample phasing plots be made? (Default: TRUE)

Author

jdemeul