Concatenate the impute output generated for each of the regions.

This function assembles the impute output generated.

combine.impute.output(
  inputfile.prefix,
  outputfile,
  is.male,
  imputeinfofile,
  region.size = 5000000,
  chrom = NA
)

Arguments

inputfile.prefix: Prefix of the input files (this is typically the outputfile.prefix option supplied when calling run.impute).
outputfile: Where to store the output.
is.male: Boolean describing whether the sample is male (TRUE) or female (FALSE).
imputeinfofile: Path to the imputeinfofile on disk.
region.size: An integer describing the region size to be used by impute (optional).
chrom: The name of a chromosome on which this function should run (names are used, supply X as 'X').

dw9