Generate plots

Generate plots

generate_plots_battenberg(
  analysis,
  distancepng,
  copynumberprofilespng,
  nonroundedprofilepng,
  d,
  psi_opt1,
  rho_opt1,
  ploidy_opt1,
  goodnessOfFit_opt1,
  minimise,
  b,
  r,
  s,
  gamma,
  ch,
  lrr,
  bafsegmented,
  chr.names,
  reliabilityFile
)