Read in the imputeinfofile.

Reads in a file with the following columns: chromosome : 1-X impute_legend : Legend file in IMPUTE -l format genetic_map : Genetic map file in IMPUTE -m format impute_hap : Phased haplotype file in IMPUTE -h format start : Start of the chromosome end : End of the chromosome is_par : 1 when pseudo autosomal region, 0 when not

parse.imputeinfofile(imputeinfofile, is.male, chrom = NA)

Arguments

imputeinfofile

Path to the imputeinfofile on disk.

is.male

A boolean describing whether the sample under study is male.

chrom

The name of a chromosome to subset the contents of the imputeinfofile with (optional)

Value

A data.frame with 7 columns: Chromosome, impute_legend, genetic_map, impute_hap, start, end, is_par

Author

sd11