Package index • SpatialPhyloPlot

All functions

SpatialPhyloPlot(): Plot spatial phylogenetic trees

calculate_centroids(): Calculate centroids

connect_multisample(): Create connections between clones in multiple samples

create_segments(): Create phylogenetic tree segments

img_crop_raster(): Crop raster image

img_get_raster(): Get Raster Image

img_name_colours(): Name colours for plotting

img_plot(): Plot tree and spots

match_clone_barcodes(): Match clone names and spot barcodes

newick_to_graph_df(): Newick tree to graph data frame

rotate_coordinates(): Rotate Image Coordinates

scale_coordinates(): Scale Coordinates